Publications

Alexander R Kovach, Kristianne M Oristian, David G Kirsch, Rex C Bentley, Changde Cheng, Xiang Chen, Po‐Han Chen, Jen‐Tsan Ashley Chi, Corinne M Linardic (2022). Identification and targeting of a HES1‐YAP1‐CDKN1C functional interaction in fusion‐negative rhabdomyosarcoma. Molecular Oncology.

D. Houle, C. Cheng (2021). Predicting the evolution of sexual dimorphism in gene expression. Mol Biol Evol.

C. Cheng, M. Kirkpatrick (2021). Molecular evolution and the decline of purifying selection with age. Nat Commun.

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C. Cheng, D. Houle (2020). Predicting multivariate responses of sexual dimorphism to direct and indirect selection. Am Nat.

C. Cheng, J. Easton, C. Rosencrance, Y. Li, B. Ju, J. Williams, H. L. Mulder, Y. Pang, W. Chen, X. Chen (2019). Latent cellular analysis robustly reveals subtle diversity in large-scale single-cell RNA-seq data. Nucleic Acids Res.

C. Cheng, M. Kirkpatrick (2019). Inversions are bigger on the X chromosome. Mol Ecol.

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X. Weng, J. T. Lovell, S. L. Schwartz, C. Cheng, T. Haque, L. Zhang, S. Razzaque, T. E. Juenger (2019). Complex interactions between day length and diurnal patterns of gene expression drive photoperiodic responses in a perennial C4 grass. Plant Cell Environ.

C. Cheng, J. C. Tan, M. W. Hahn, N. J. Besansky (2018). Systems genetic analysis of inversion polymorphisms in the malaria mosquito Anopheles gambiae. Proc Natl Acad Sci U S A.

J. M. Sardell, C. Cheng, A. J. Dagilis, A. Ishikawa, J. Kitano, C. L. Peichel, M. Kirkpatrick (2018). Sex differences in recombination in sticklebacks. G3 (Bethesda).

K. Yang, D. B. Blanco, X. Chen, P. Dash, G. Neale, C. Rosencrance, J. Easton, W. Chen, C. Cheng, Y. Dhungana, A. Kc, W. Awad, X. J. Guo, P. G. Thomas, H. Chi (2018). Metabolic signaling directs the reciprocal lineage decisions of alphabeta and gammadelta T cells. Sci Immunol.

A. Fontaine, I. Filipovic, T. Fansiri, A. A. Hoffmann, C. Cheng, M. Kirkpatrick, G. Rasic, L. Lambrechts (2017). Extensive genetic differentiation between homomorphic sex chromosomes in the mosquito vector, Aedes aegypti. Genome Biol Evol.

C. Cheng, M. Kirkpatrick (2017). Environmental plasticity in the intersexual correlation and sex bias of gene expression. J Hered.

H. A. Uyhelji, C. Cheng, N. J. Besansky (2016). Transcriptomic differences between euryhaline and stenohaline malaria vector sibling species in response to salinity stress. Mol Ecol.

C. Cheng, M. Kirkpatrick (2016). Sex-specific selection and sex-biased gene expression in humans and flies. PLoS Genet.

A. B. Hall, P. A. Papathanos, A. Sharma, C. Cheng, O. S. Akbari, L. Assour, N. H. Bergman, A. Cagnetti, A. Crisanti, T. Dottorini, E. Fiorentini, R. Galizi, J. Hnath, X. Jiang, S. Koren, T. Nolan, D. Radune, M. V. Sharakhova, A. Steele, V. A. Timoshevskiy, N. Windbichler, S. Zhang, M. W. Hahn, A. M. Phillippy, S. J. Emrich, I. V. Sharakhov, Z. J. Tu, N. J. Besansky (2016). Radical remodeling of the Y chromosome in a recent radiation of malaria mosquitoes. Proc Natl Acad Sci U S A.

H. A. Smith, B. J. White, P. Kundert, C. Cheng, J. Romero-Severson, P. Andolfatto, N. J. Besansky (2015). Genome-wide QTL mapping of saltwater tolerance in sibling species of Anopheles (malaria vector) mosquitoes. Heredity (Edinb).

B. J. Cassone, C. Kamdem, C. Cheng, J. C. Tan, M. W. Hahn, C. Costantini, N. J. Besansky (2014). Gene expression divergence between malaria vector sibling species Anopheles gambiae and An. coluzzii from rural and urban Yaounde Cameroon. Mol Ecol.

K. R. Reidenbach, C. Cheng, F. Liu, C. Liu, N. J. Besansky, Z. Syed (2014). Cuticular differences associated with aridity acclimation in African malaria vectors carrying alternative arrangements of inversion 2La. Parasit Vectors.

C. Cheng, B. J. White, C. Kamdem, K. Mockaitis, C. Costantini, M. W. Hahn, N. J. Besansky (2012). Ecological genomics of Anopheles gambiae along a latitudinal cline: a population-resequencing approach. Genetics.

B. J. Cassone, M. J. Molloy, C. Cheng, J. C. Tan, M. W. Hahn, N. J. Besansky (2011). Divergent transcriptional response to thermal stress by Anopheles gambiae larvae carrying alternative arrangements of inversion 2La. Mol Ecol.

B. J. White, M. K. Lawniczak, C. Cheng, M. B. Coulibaly, M. D. Wilson, N. Sagnon, C. Costantini, F. Simard, G. K. Christophides, N. J. Besansky (2011). Adaptive divergence between incipient species of Anopheles gambiae increases resistance to Plasmodium. Proc Natl Acad Sci U S A.

B. J. White, C. Cheng, F. Simard, C. Costantini, N. J. Besansky (2010). Genetic association of physically unlinked islands of genomic divergence in incipient species of Anopheles gambiae. Mol Ecol.

B. J. White, C. Cheng, D. Sangare, N. F. Lobo, F. H. Collins, N. J. Besansky (2009). The population genomics of trans-specific inversion polymorphisms in Anopheles gambiae. Genetics.